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Block: doRMA()

Author: Henrik Bengtsson
Created on: 2010-08-05

The Robust Multi-Array (RMA) processing of Affymetrix expression arrays can be done either by doing each step explicitly as in the vignettes, or using the following doRMA() "block" method.

Usage:

ds <- doRMA("Affymetrix-HeartBrain", chipType="HG-U133_Plus_2");

Argument 'verbose': Since RMA will take minutes or hours, we suggest that you add argument 'verbose=-10' to see some verbose output while processing the data set.

The methods returns a ChipEffectSet.