aroma-project.org

Affymetrix chip types

DNA Copy Number and Genotyping arrays/array plates

• ax13339
• Axiom_GW_Hu_SNP [not supported by aroma]
• CentHindAv2 & CentXbaAv2
• Citrus_SNP
• Cytogenetics_Array
• CytoscanHD_Array
• DogSty06m520431
• DMET_Plus
• GenomeWideSNP_5
• GenomeWideSNP_6
• Mapping10K_Xba131
• Mapping10K_Xba142
• Mapping50K_Hind240 & Mapping50K_Xba240
• Mapping250K_Nsp & Mapping250K_Sty
• MOUSEDIVm520650

DNA Resequencing arrays

• Mitochip_2

RNA Exon and Gene-level arrays/array plates

• Canine_2
• Citrus
• HG-Focus
• HG_U95A, HG_U95B, HG_U95C, HG_U95D, HG_U95E
• HG_U95Av2
• HG-U219
• HG-U133_Plus_2
• HG-U133A & HG-U133B
• HG-U133A_2
• HT_HG-U133A & HT_HG-U133B
• HT_HG-U133_Plus_PM
• Hu6500 [REQUEST: More information on this chip type is needed]
• Hum6000 [REQUEST: More information on this chip type is needed]
• HuEx-1_0-st-v2 (and HuEx-1_0-st-v1)
• HuGene-1_0-st-v1
• HuGene-1_1-st-v1
• HuGeneFL (a.k.a. Hu6800)
• MoEx-1_0-st-v1
• MoGene-1_0-st-v1
• MoGene-1_1-st-v1
• Mouse430_2
• RaEx-1_0-st-v1
• RaGene-1-0-st-v1
• X_laevis_2

microRNA Expression arrays

• miRNA-1_0
• miRNA-2_0

Tiling arrays

• Hs_PromPR_v02
• Mm_PromPR_v02
• Sc03b_MF_v04 (S. cerevisiae)

Miscellanous

• Test3

* Restricted access.