aroma-project.org

The aroma.affymetrix package

To install or update aroma.affymetrix and all required packages, start R and do:

source("http://aroma-project.org/hbLite.R");
hbInstall("aroma.affymetrix");

The aroma.cn package

To install or update aroma.cn and all required packages, start R and do:

source("http://aroma-project.org/hbLite.R");
hbInstall("aroma.cn");

Patches

The above will also install patches, if available, and uinstall obsolete patches.  To install patches manually, see the How tos section.

News/Change logs

• aroma.affymetrix NEWS
• aroma.cn NEWS
• aroma.core NEWS
• aroma.light NEWS
• R.filesets NEWS
• aroma.tcga NEWS(*)

(*) Please note that the aroma.tcga package is under heavy development and completely lacks documentation.  Basically the only reason to install it is if I (Henrik) send you analysis scripts that requires it. /HB 2010-01-26

Requirements

Software: R
Operating system: Linux, OSX, Windows, ... (any that runs R)
Memory: Minimum 500MB of RAM.  Recommended >1Gb.
Disk space: Roughly 3-5 times the total size of your raw data files.

License

Unless stated otherwise, the aroma.* and R.* packages are distributed under the LGPL v2.1 license, and the documentation on this site is published under the GFPL v1.3 license.  Copyright holder is Henrik Bengtsson and/or the original author of the artifact.