aroma-project.org

Mouse Exon 1.0 ST Array

Affymetrix press release: First quarter of 2006.

Resources

By aroma-project.org:

As with Human Exon 1.0 ST array, we have created versions of CDFs based on Affymetrix's annotation 'level' as given in the NetAffx probesets csv file (see http://www.affymetrix.com/analysis/downloads/current_exon/).  Consult the Affymetrix documentation for how these levels of annotation were designed.

NetAffx (R1) 18 Jul 2008, created by Mark Robinson (WEHI/Garvan)

• MoEx-1_0-st-v1.cdf [274.30MB] Binary version of the unsupported CDF file (shown above) from Affymetrix.  1,257,006 units each representing a probeset, no grouping.
• MoEx-1_0-st-v1,coreR1,A20080718,MR.cdf [30.53MB] Core probesets only.  17,831 units/transcript clusters, 224,053 groups/probesets.
• MoEx-1_0-st-v1,extendedR1,A20080718,MR.cdf [90.85MB] Extended + Core probesets: 112,205 units/transcript clusters, 626,470 groups/probesets.
• MoEx-1_0-st-v1,fullR1,A20080718,MR.cdf [176.32MB] Full+Extended+Core probesets: 265,508 units/transcript clusters.

Ensembl-centric CDFs

• MoEx-1_0-st-v1,U-Ensembl50,G-Affy,EP.cdf [38.05MB] 21,837 units/transcript clusters with Ensembl identifiers,  279,424 groups/probesets. 

By Affymetrix:

• Technical Support Documentation
• Datasheet 
• Public data sets: Tissue / Mixture / Colon Cancer datasets