aroma.affymetrix 1.5.0
aroma.cn 0.4.4
What's new?
Below are presentations related to aroma-project.org and/or statistical methods by us.
2009-03-16: Henrik Bengtsson, A Single-Array Preprocessing Method for Estimating Full-Resolution Raw Copy Numbers from all Affymetrix Genotyping Arrays, Comprehending Copy Number Variation (Tools, Applications and Results), Cambridge Health Institute, March 16, 2009, San Diego, CA.
Slides (39): ppt [0.8Mb], pdf [0.8Mb]. Handouts: 6up.pdf [0.7Mb]
2008-12-16: Henrik Bengtsson, Low-Level Copy Number Analysis (CRMA v2 preprocessing), CEIT Workshop on SNP arrays, Dec 15-17, 2008, San Sebastian, Spain.
Slides (96): ppt [2.0Mb], pdf [2.1Mb]
2008-12-15: Henrik Bengtsson, Low-Level Copy Number Analysis (Part 1-Background, Part 2-Simple preprocessing, Part 3-aroma.affymetrix), CEIT Workshop on SNP arrays, Dec 15-17, 2008, San Sebastian, Spain.
Slides (64): ppt [10.1Mb], pdf [6.6Mb]
2008-04-24: Henrik Bengtsson, aroma.affymetrix - Processing very large Affymetrix data sets in bounded memory (Working with Large Datasets), BioC 2008 developers meeting, Lausanne, Switzerland.
Slides: ppt [531kb], pdf [445kb]
2008-01-24: Henrik Bengtsson, Copy-number estimation on the latest generation of high-density oligonucleotide microarrays, Mathematical Biosciences Institute, The Ohio State University.
Slides: ppt [4.3Mb], pdf [1.9Mb]
2007-09-13: Henrik Bengtsson, Estimating chromosomal copy numbers from Affymetrix SNP & CN chips, Statistics and Genomics Seminar, UC Berkeley.
Slides: ppt [3.3Mb], pdf [1.7Mb]
2007-08-07: Henrik Bengtsson, aroma.affymetrix - Analysis of small to very large Affymetrix data sets, BioC2007 lab session, 13:00-15:00, August 7, 2007, Fred Hutchinson Cancer Research Center, Seattle, US.
Slides: pdf [0.5Mb], Suppl. slides: pdf [0.9Mb], ppt [3.4Mb]
Cut'n'paste code: src [9kb]
2007-05-31: Henrik Bengtsson, Copy-number estimation using Robust Multichip Analysis.
Thursday May 31, 2007 @ 9:30-10:45, INSERM Workshop #177 on Statistical Methods and novel strategies to search for genes involved in common diseases, Londe-Les-Maures (Toulon), France.
http://ist.inserm.fr/BASIS/elgis/fqmat/atelier/SDF?DOC_NUM=177
2007-04-21: Henrik Bengtsson, Enhanced method for identifying copy-number aberrations in small to very large oligonucleotide microarray data sets.
Saturday April 21, 2007 @ 13:30-14:00, Affymetrix Low Level Workshop, Oakland Marriott City Center, Oakland, 2007.
http://www.affymetrix.com/corporate/events/low_level_workshop/2007_04_low_level_workshop.affx
2007-01-08: Henrik Bengtsson, Crash course: Using aroma.affymetrix for copy-number analysis.
Monday January 8, 2007 @ 13:30-16:00, Bioinformatics, WEHI, Melbourne.
http://www.maths.lth.se/bioinformatics/calendar/20070108b/
2006-09-28: Henrik Bengtsson, Package aroma.affymetrix - How to analyze huge Affymetrix data sets in R on a notebook.
Thursday September 28, 2006 @ 16:00-17:00, Statistics and Genomics
Seminar, 1011 Evans Hall, University of California, Berkeley
http://www.maths.lth.se/bioinformatics/calendar/20060928b/